fix: auto-resume disciplines + stop bonuses while paused (bug #380)

Bug 1 - No auto-resume: Replaced 'if (disc.autoPaused) continue' with a
check that tests whether sufficient mana is now available. If so, clears
autoPaused and processes the tick normally. Mana regen runs before
discipline processing, so updated mana values are already available.

Bug 2 - Bonuses while paused: Added '&& !disc.autoPaused' filter in
discipline-effects.ts so paused disciplines no longer contribute stat
bonuses, conversion rates, or perk effects.

All 1196 tests pass.

docs/dependency-graph.json

@@ -1,6 +1,6 @@
 {
   "_meta": {
-    "generated": "2026-06-12T12:18:20.580Z",
+    "generated": "2026-06-12T16:57:07.675Z",
     "description": "Import dependency graph for src/lib/game. Keys are files, values are arrays of files they import.",
     "usage": "To find what a file affects, search for its path in the VALUES. To find what a file depends on, look at its KEY entry."
   },